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News
Mapping the genome of lake trout to ensure its survival
Published: 24 September 2021
Lake trout, once the top predator fish across the Great Lakes, reached near extinction between the 1940s and 1960s due to pollution, overfishing, and predation by the invasive lamprey eel. Once showing striking levels of diversity in terms of size, appearance, and ability to adapt to varied environments, now the only lake trout populations to have survived are to be found in Lake Superior and Lake Huron. An international team of researchers from the U.S. and Canada, including researchers from 捆绑SM社区, have now managed to create a reference genome for lake trout to support U.S. state and federal agencies with reintroduction and conservation efforts.
Genomes of salmonids, a family that includes lake trout, are harder to compile than those of many other animals, the research team said. 鈥淏etween 80-100 million years ago, the ancestor of all salmonid species that lake trout belong to went through a whole genome duplication event. As a result, salmonid genomes are difficult to assemble due to their highly repetitive nature and an abundance of duplicated genomic regions with similar sequences,鈥� explains co-author of the study and head of Genome Sciences at the , where the sequencing took place. 鈥淭he assembly methodology we applied at the 捆绑SM社区 Genome Centre generated the sequence of whole chromosomes and allowed the construction of a map describing patterns of recombination across the genome. I am very excited by the wide range of possible applications for this novel genetic resource鈥�
The newly released genome assembly will allow researchers to better understand the genetic basis for traits that allowed lake trout to exploit a diversity of niches and habitats across their range. It will also help identify the genes and biological processes associated with variation in survival and reproductive success among the various hatchery populations that have been used to reintroduce lake trout to the Great Lakes.
The study: by Seth R. Smith was recently published in
DOI:
The research was funded by the CanSeq150 - a platform for genome sequencing and analysis initiated by Canada鈥檚 Genomics Enterprise (CGEn). The 捆绑SM社区 Genome Centre is one of the three CGEn nodes.