How cells deal with uncertainty
捆绑SM社区 researchers use probability theory to demystify patterns of cell behaviour
Researchers at 捆绑SM社区 have found that cells respond to their ever-changing environment in a way that mimics the optimal mathematical approach to doing so, also known as Bayes鈥� rule; an application of probability theory. Their findings are published in the April 9 issue of PNAS, the Proceedings of the National Academy of Sciences.
鈥淏iology is seeing a re-birth,鈥� said Dr. Peter Swain, an assistant professor in the Department of Physiology and a Canada Research Chair in Systems Biology, as more researchers are 鈥渢hinking about the cell using schemes that we know work from engineering and computer science.鈥�
The study was carried out at 捆绑SM社区鈥檚 Centre for Nonlinear Dynamics in Physiology and Medicine (CND). Eric Libby, PhD candidate at the CND and lead author on the paper, Dr. Ted Perkins, assistant professor in the School of Computer Science, and Dr. Swain simulated data on a biochemical response mechanism in a strain of E. coli bacteria. 鈥淭he ideal mathematical model and the simulation meshed perfectly with Bayes鈥� rule," remarked Swain. The bacteria鈥檚 collection of genes and proteins that responded to changing environmental conditions acted as a successful Bayesian 鈥榠nference module鈥�, which takes noisy, uncertain information and interprets what it means for the cell.
There are many known schemes for inference that exist in mathematics. This study suggests that cells may have evolved to incorporate the most efficient decision-making abilities into their biochemical pathways.
Quick, accurate cell responses to signals are necessary for survival. When we sense danger, our bodies can tell if the signal is real and trigger the production of adrenaline immediately. However, modeling the effects of a signal on one part of a cell, even in isolation from body tissues and organs, is complicated. 鈥淲ith many drugs, we don鈥檛 know how they work or exactly what they are targeting in a cell,鈥� noted Swain. He explained that further study of inference modules could allow us to model more sophisticated cellular behavior, which could one day lead to computerized drug experiments and trials.
This research was funded by the National Sciences and Engineering Research Council of Canada (NSERC) and the Mathematics of Information Technology and Complex Systems (MITACS) National Centre for Excellence.